Identifikasi Bakteri Kontaminan Pada Kultur Jaringan Bambu Jenis Fargesia scabrida

Authors

  • Erna Wulandari UIN Sunan Kalijaga Yogyakarta

Keywords:

Plant tissue isolation method

Abstract

Contaminant microbes are a common problem in plant tissue culture. Bacteria is a type of microbial that becomes a contaminant in plant tissue culture. This study aims to isolate and determine the diversity of bacterial contaminants of Fargesia scabrida bamboo tissue culture. In this study, bacterial isolation, phenotypic characterization included morphology, physiological tests, biochemical tests, identification, and phenetic numerical analysis were carried out. The results of this study indicated that 7 bacterial isolates were obtained. Based on profile matching using Bergey's Manual of Determinative Bacteriology, 1 isolate belongs to the genus Bacillus, 1 isolate belongs to Listeria, 2 isolates Erwinia, 2 isolates Lactobacillus, and 1 isolate belongs to the genus Klebsiella. The dendogram generated from the Simple Matching coefficient (SSM) parameter using the average linkage algorithm shows that at a similarity value of 70%, it is divided into 5 clusters. While the dendrogram generated from the SJ parameters using the average linkage/UPGMA at a similarity value of 70% 7 OTUs are divided into 7 clusters.

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References

Barbara, M. Reed and Piyarak Tanprasert. 1995. Detection and Control of Bacterial Contaminants of Plant Tissue Cultures. A Review of Recent Literature Ermayanti, T.M. 1997. Mengenal dan Mengatasi Kontaminan Pada Biak Jaring Tanaman. Warta Biotek Tahun XI No. 3, September-Desember 1997. Plant Tissue Culture and Biotechnology 137-142. Volume No.3. USA.

Bastiaens, L. 1983. Endogenous Bacteria In Plants and Theirimplications In Tissue Culture- A Review. Med. Fac. Landbouww. Rijksuniv. Gent 48: 1-11.

Boxus, P. H. and Terzi, J. M. 1987. Control of Accidental Contamination During Mass Propagation. Acta Hort. 225: 189-193.

Buckley, P.M., DeWilde, T.N., and Reed, B.M. 1995. Characterization and Identification of Bacteria Isolated from Micropropagated Mint Plants. In vitro Cell. Dev. Biol. 31P: 58-64.

Coenye, T. and Vandamme, P. 2003. Diversity and Significance of Burkholderia species Occupying Diverse Ecological Niches. Environ. Microbiol. 5(9): 719-729.

Compant, S., Nowak, J., Coenye, T., Clement, C., and Ait Barka, E. 2008. Diversity and Occurrence of Bukholderia spp. In The Natural Environment. Federation of European Microbiological Societies (FEMS). Microbiology Reviews 32(4) : 607-26.

Devi, C.S. and Srinivasan, V.M. 2006. Studies on Various Atmospheric Microorganisms Affecting the Plant Tissue Culture Explants. Academic Journals Inc., USA. American Journal of Plant Physiology I (2): 205-209.

Janssen, P.H. 2006. Identifying The Dominant Soil Bacterial Taxa In Libraries of 16S rRNA and 16S rRNA Genes. Applied and Environmental Microbiology 72(3) : 1,719-28.

Johansen, J.E., Binnerup, S.J., Kroer, N., and Molbak, L. 2005. Luteibacter rhizovicinus gen. nov., sp. Nov., a yellow-pigmented gammaproteobacterium isolated from the rhizosphere of barley (Hordeum vulgare L.). International Journal of Systematic and Evolutionary Microbiology 55(6): 2, 285-291.

Kunnemann, B. P. A. M., and Faaij-Groenen, G. P. M. 1988. Elimination of bacterial contaminants: a matter of detection and transplanting procedures. Acta Hort. 225: 183-189.

Leifert, C. 1990. Contaminants of Plant Tissue Cultures. Ph.D. thesis, Faculty of Agricultural and Food Sciences, Notingham University, UK.

Leifert, C., Camotta, H., and Waites, W.M. 1992. Effect of Combinations of Antibiotics on Micropropagated Celmatis, Dhelphinium, Hosta, Iris, and Photinia. Plant Cell Tissue Culture Organ Cult. 29:153-160.

Leifert, C., Morris, C.E. and Waites, W.M. 1994. Ecology Of Microbial Saprophytes and Pathogens In Tissue Culture and Field-Grown Plants: Reasons For Contamination Problems In Vitro. Critical Reviews in Plant Science 13: 139-183.

Leifert, C., Waites, W.M., and Nicholas, J.R. 1989. Bacterial Contamination of Micropropagated Plant Tissue Cultures. J. Appl. Bact. 67: 353-361.

Leifert, C.., Camotta, H., Wright, S.M., Waites, B., Cheyne, V.A. and Waites, W.M. 1991. Elimination Of Lactobacillus Plantarum, Corynebacterium Sp, Staphylococcus Saprophyticus, and Pseudomonas paucimobilis From Micropropagated Hemerocallis, Choisya, and Delphinium Cultures Using Antibiotics. J. Appl. Bact. 71: 307-330.

Long, R.D., Curtin, T.F. and Cassels, A.C. 1988. An Investigation of The Effects of Bacterial Contaminants on Potato Nodal Cultures. Acta Hort. 225 : 83-91.

Odutayo, O. I., Amusa, N. A., Okutade, O. O., and Ogunsanwo, Y. R. 2007. Sources of Microbial Contamination in Tissue Culture Laboratories in Southwestern Nigeria. Departement of Biological Sciences Olabisi Onabanjo University. Ago-Iwoye, Nigeria. African Journal of Agricultural Research Vol 2(3), pp. 067-072.

Taber, R.A., Thielen, M.A., Falkinham III, J., and Smith, R.H. 1991. Mycobacterium scrofulaceum: A Bacterial Contaminant In Plant Tissue Culture. Elsevier Scientific Publishers Ireland Ltd. Plant Science, 78. pp. 231-326.

Trick, I., and Lingens, F. 1985. Aerobic Spore-Forming Bacteria As Detrimental Infectants In Plant Tissue Cultures. Appl. Microbiol. Biotechnol. 21: 245-249.

Wakil, S.M., and Mbah, E.I. 2012. Screening Antibiotics for The Elimination of Bacteria from in vitro Yam Plantlets. Department of Microbiology. University of Ibadan, Nigeria. AU J.T. 16(1): 7-8.

Goodfellow, M. and O’Donnell, A.G. 1993. Handbook of New Bacterial Systematics. Academic Press. Harcourt Brace and Company Publishers. London.

Goodfellow, M. 2000. Microbial Systematics: Background and Uses In Applied Microbial Systematics (F.G. Priest and Goodfellow, eds). Kluwer Academic Publishers, Dordrecht, The Netherlands.

Holt, G.J., Krieg, N.R., Sneath, P.H.A., Staley, J.T., Williams, S.T. 1994. Bergey’s Manual of Determinative Bacteriology 9th Edition. USA: Williams and Wilkins Baltimore.

Kotiranta, A., Lounatmaa, K., and Haapasalo, M. 2000. Epidemiology and Pathogenesis of Baccilus cereus Infections. Microbes and Infection 2(2):189-8.

Madigan, Michael. T., Martinko, John, M., Stahl, David, A., and David P. Clark. 2012. Brock Biology of Microorganisms. Thirteen Edition. Pearson. San Fransisco. pp. 674-676.

Claus, D., and Berkeley, R. C. W. 1986. Description of The Genus Bacillus In: Bergey’s Manual of Systematic Bacteriology. Pp. 1105-1139. Sneath, P. H.A., Mair, N. S., Sharpe, M. E., and Holt, J. G. Eds. Williams & Wilkins. London, U.K.

Kado, C.I. 2006. Erwinia and Related Genera. Chapter 3.3.15. Prokaryotes (2006) 6:443-450. DOI: 10.1007/0-387-30746-x_15.

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2022-10-31
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